Scaffold Ga0209536_100080565

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100080565
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4176
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → unclassified Cellvibrionales → Cellvibrionales bacterium TMED49 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001476	Metagenome / Metatranscriptome	688	Y
F035742	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_10008056512	F001476	N/A	NYKKYWIEDTKQGHLIKICHGENDQVTELDLRWNNRRRDNDNRVNYVKIKNYT
Ga0209536_1000805654	F035742	N/A	MDKMTQEKGRKYDGKSRPPNELYSKRWEEIFGSKKEELEPDDQEYLDSLKEKL