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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027917 Open in IMG/M |
| Scaffold ID | Ga0209536_100043271 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5974 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | White Oak River estuary, North Carolina, USA | |||||||
| Coordinates | Lat. (o) | 34.640199 | Long. (o) | -77.109447 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002260 | Metagenome / Metatranscriptome | 577 | Y |
| F011761 | Metagenome / Metatranscriptome | 287 | Y |
| F051963 | Metagenome / Metatranscriptome | 143 | N |
| F078735 | Metagenome / Metatranscriptome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209536_1000432713 | F011761 | AGGAG | MAYILGGGNNEEDGFTTAIANFALRAMHESQGLVDFTQVVTPNQGNEYLVPNFAPITYQDYTPVNGEGGFATGGAVEQNPALGQGSITATPAVAATAFDVFYGWTTAFQLAATIGAELGESYAEKVDQRVCAAFTSFKATPSNTLYSPTPQDGFARPLELGAMELVADQDSPAGATGGFTANSVLGLVRNVKQNYKAARLPGTPIIVLDANGDSAEVTASTRSGSSMNRMLDELTGGAVGSADSGGSAITSLGEELLATGQLSNIYGCAVIFSTFLDTDTRTVAGVSGETVLVGAYFHETAIFTVLKEGLQVKMGEKPGGLQMWVTGLAYMGAGVADKRRGGAINILQA |
| Ga0209536_1000432714 | F002260 | AGGA | MSVPYQRVSNATVADIIFYDPAAERRASQMQVNWDDYFKVGSQEILYKLEFGWWPKYCDTVMGATYYANLPNGQMVSAFNPAQLIKNDQTLIRLDTFMAIKIFYESIVSDTSNVNSVDTANFNHALDRFEAEWTKALELMNFYDLNQDAPNGPTTKLEENWVADPDYFTGDRRYF |
| Ga0209536_1000432715 | F051963 | AGGAG | MARPLVDKAEVVTYLRAVARQQTPIIEVSATYPSDEDTVAYGLYVDDVTTNSRSVNQLAIQKCGQMYDAVDQFNILYISFQNDPQSLAIQDAIEDLAANVNFFDGYTSVEFDREVTIGNKSEIHTYTFDLTRLEFNNAYQS |
| Ga0209536_1000432719 | F078735 | GAG | MQIDTIGKRYGLLPSEVLMRADTFDLYIMDAALTFENYHNKKANSKNGRAPIPELTIEEMYAIKGKKPE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |