Scaffold Ga0209536_100042580

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100042580
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6030
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F016269	Metagenome / Metatranscriptome	248	Y
F018534	Metagenome / Metatranscriptome	234	Y
F025275	Metagenome	202	Y
F027835	Metagenome / Metatranscriptome	193	N
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y
F084107	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1000425801	F016269	N/A	MKANDFIFICEEYNIDPVIASEDEGVRKILKTSTSDVNQQLMLSGYL
Ga0209536_10004258010	F018534	N/A	MALPTLTDFLNSWDKLIVTGMTPERNDSVMTTTTNNIPVAIEYRHQISSSTGECSTIAYLVAYDENGNPVTLRNQTYGCFGDEEKQFHQWFAKKMGKACGLDVSRRLDVSRAVDDFLE
Ga0209536_10004258013	F027835	N/A	MKTQQHIDALYERRKTAGGFESALIDAYMKADGGNAQILEDAFRGTRFDLLPKPRFDHGIETLRAAVRWADMRDESYNFDKTAEELLQEYEIWADCTDEQPIDQHFLTRLQ
Ga0209536_1000425802	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDEAKTAKQKSLAGLMMAAHEEIQSTTDGMQDIIVFSDDEGESEILKIVELKPTFPENVSIREFFVWDQMNCEAPYDGDYLPTDMAVIKDLCERQEAVADTFNVETFHDFVNDLWYGGTAMFDADDLCVYYFRVPKPNQFTS
Ga0209536_1000425804	F029600	N/A	MKYWNGEGQYQDLFDKYWKELVPDRGEADTDAGNALRAIARINHDVFNNGAGNIVNESMEVDDDGEWYTLYEVERWWEKLFDDIYDYSRLDTGRLKRKIIESVQFDRDNGLSDMLDDYIDHIILKVDESLKLQKA
Ga0209536_1000425805	F032639	GAG	MLDKNKKLINEDGFYAGSELKWGMDDVRNVLERYGIATATSREDVERILIAAFQDNYRLMETIDEAIGDTIVYMIEEGQLKTDEQ
Ga0209536_1000425806	F009699	N/A	MMTDKEAQAFMQKVDATAPFWVELHDEDRPTIKIQGRDVPRCLYNLMITRRDVNLYLHGLKPHRGWKIGDVKAYFGLTGGKQKVADAINAMHDEFMGRFKEQDDAGQE
Ga0209536_1000425807	F084107	N/A	MNEDLKLQISNAFNDTGAYKELNRLLFVSNTLGRQEIEELVDRLEAFIVQEIDEIIDER