Scaffold Ga0209536_100018220

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100018220
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9921
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018545	Metagenome / Metatranscriptome	234	Y
F051152	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_10001822011	F018545	N/A	SDGLISIISGSTAGVVPAGTGDYTLANLEVMLAALSSDVADREDLTFFMSVSGFRQLISNIRQQNNFWFDPVSVSNRGGILEVGMPFQNAKIVGTVGLQGSGRIVLGPAKQIVAGTDLMSDFSEFQLWYDINTDQLKHRISTKLGVNVAFPEFWVSNDVA
Ga0209536_1000182209	F051152	N/A	MLQFNKSQITSTNAVYLETVNTGSGYYDNLVAVYSQSYDQSSGTFDITATSVPNQYNNWLVFVAQGTFVPSYTGQYDVSIYTKEEVAATWQSVATAWDSYNEIWETAGDALPITFLYSDRAWISGSNESSITQYVSADENGTYTTYNG