Scaffold Ga0209536

Basic Information
Taxon OID	3300027917 Open in IMG/M
Scaffold ID	Ga0209536_100009831 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027917 Open in IMG/M

Scaffold ID

Ga0209536_100009831 Open in IMG/M

Source Dataset Name

Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14162
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (69.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14162

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (69.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

White Oak River estuary, North Carolina, USA

Coordinates

Lat. (^o)

34.640199

Long. (^o)

-77.109447

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F015724	Metagenome	252	Y
F080002	Metagenome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_10000983115	F008401	N/A	MESARLLTIAQTAELLNCSAGFVRKRISLTESNQPGGWPKGIFVNLQPNGAKSLYRINKDALEAYLNSAEEEEAKVEESAACAV
Ga0209536_10000983118	F015724	GGA	MARKKGSDDFGWHSHQPKKSKFGFSSFEGASSTHQLSSPVPFKRKFRPDFNLKDFSILFDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGIGAALPGVCYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYSIKSVTQTSGTVYAVELSSNFGPPISFFTGEILSDRFAADGTEKTSYNNYVVVGVGNGTTPITPSFAPIFNSIFISLDTNNSWSVINNETLAAPANLPTVGDYFTTEMRFGCNCPDYLAREDFNLYEYNLKRRYPYTLPQDLKPGLYDAGKDFLSSRTENTRDFPGFTRDFGFLYVKRLLDLPSYTDGSKVYSDPNLIYFAPRWCKHIYASFWDMQNRFGSDAFPSEWLSQPTDEPMDDRYREQFDINLIKQTTFEKRQERLRWWEKYSPSKNTVPVHMMYPDMHPTMVKTLNFDTLASGTTTAMTASGFEMFTIDQYDPFAPPDPAVTPKLDGGTYSNGVLVSGASLIYDGGQYANGVLIPYPSLPSLINGGTY
Ga0209536_1000098315	F080002	N/A	MAVTTYTSPAYSQSSTTELKRPCLWEDEYKIENLPAWIYTDNQPPKDTQECEAKLSSLNYTVRDIELQIEIRELELKTGYSRHGNAFDFERWKVGALKAKQTHLYLLNAYTYWLIKNTPKVLDTPSKLAKLITLLIEDPSDFEQKAKALLN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209536_100009831

Overview

Ecosystem & Geography

Associated Families

Sequences