Scaffold Ga0209536_100006558

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100006558
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17755
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (83.72%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093945	Metagenome / Metatranscriptome	106	N
F097455	Metagenome / Metatranscriptome	104	N
F105236	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_10000655816	F097455	AGGAGG	MEDKKIIDLINDAILKTKSELFPVIDSLNNKIEAQDIFIKELKSELRVLNDQLDDHDNTISDITDRLNI
Ga0209536_1000065586	F105236	AGGAG	MNEDEILSKLTKKNNPNSPTAKYGVFGCSLGIDLYKQLTNYCTMNNISKAALIRTLIKDYLSNVKSKENTNV
Ga0209536_1000065588	F093945	N/A	MYRGNTMNRKVYMSDKDMLKLHEDQLKLTQANYDLLKIMIDSNTRQINFIKKMILAILIVLFVYFAAELIVGIQ