Scaffold Ga0209069_10204249

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209069_10204249

Scaffold Ga0209069_10204249

Overview

Basic Information
Taxon OID	3300027915 Open in IMG/M
Scaffold ID	Ga0209069_10204249 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1009
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania
Coordinates	Lat. (^o)	41.5935	Long. (^o)	-78.5142	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058275	Metagenome / Metatranscriptome	135	Y
F060747	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209069_102042491	F058275	AGGAG	MTYPSLRPGARPVAAACFRAVRQRLAYIRGHERTLTALGGFRREVAARTCARLRRETRLQLQAMRQLL
Ga0209069_102042493	F060747	AGGAG	MQTPPVRLSLAPGTTAHQLMAQGMPESSAYHALKRGWYCPGYNQRDYPQHDGPGGFAILETPERFVRAYVLRTLAQWDIAPRRDLVEDLTQDGLLACWTRRHAPHIQNFPRYYAAMLRGLVTQHCKRLQREQQQLRPWEEAGPC

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.