NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209069_10115628

Scaffold Ga0209069_10115628


Overview

Basic Information
Taxon OID3300027915 Open in IMG/M
Scaffold IDGa0209069_10115628 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1307
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.5935Long. (o)-78.5142Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019891Metagenome / Metatranscriptome227Y
F057937Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209069_101156282F057937AGGMSRVIRTFRNATNEEVGRLTFEEKDDRLHIQSAAPPGIDRRFRTEKGAANWWESNVDPETGKIRR
Ga0209069_101156283F019891AGGAGMSDWSRDAALRFAALQKLKQVQDAKVIRDQNDLSFHIAKVWADLCELFRERCAEFNAEPGVTGILSCDTKRAQELKITRSDNAAMLRGAFDLKRHTIHFMGPNIGKEKSEIKIEVIEGSSTMRFVDILHRT

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