Scaffold Ga0209069_10027733

Overview

Basic Information

• Taxon OID: 3300027915
• Scaffold ID: Ga0209069_10027733
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2652
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.5935
  • Long. (^o): -78.5142

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002143	Metagenome / Metatranscriptome	590	Y
F037102	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209069_100277331	F037102	AGGAGG	MNERAPDLTQQVLQPEMHEKILLRAAELVAMGWTRGTAARDADGQKVRSTAPQATRWCVVGAVDRALYELLTLDVYDLLGLEVDAYDTAPCPVELLRALRRPLQRVLGRSGLAHWNDRGCPDPAAAEQLLREAAAMAARS
Ga0209069_100277335	F002143	N/A	MAHAPDPNEPIQRFLGQWSPMTRAEALHLALQSLRDRVEPDRVLACELAWEVHAKGYWSQVRNADGTTYPTEEDYFRHVLGLASWRTAYKRLAIGRMLTRLEEPERSLLRSGLAQVGLAKATVVAPAIERFHVWQTWLQCASEMSMVLLQAKVSEALDALPRGREPAPPGERFRRDVLSAMPDIEAMELVERFFHLGKRVVGSPNPIAIFLAGCRECLPEWELQAAKRPRGPSAASNPSVCPRGQNSI