Scaffold Ga0209698_10659156

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209698_10659156

Scaffold Ga0209698_10659156

Overview

Basic Information
Taxon OID	3300027911 Open in IMG/M
Scaffold ID	Ga0209698_10659156 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	800
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Clearfield County
Coordinates	Lat. (^o)	41.170727	Long. (^o)	-78.4726	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007126	Metagenome / Metatranscriptome	357	Y
F029532	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209698_106591561	F029532	N/A	SGADPGSVPEEDGGDRQAQLLGAYAEAGMLWAKMVGSTMALAQALLGRGDRDGARRLAGFLADAGEDGPAAELNIQLGKAVWDSCRGPLQDISNTMPPAAIGKAIDALRAVLLEVPEDFPDRNREVNRFLPPLAASVLAVMREQEIDIPYSSRVEHIAAGGVARYPDIVKLSLDEIAAEFDGLCHRPANQ
Ga0209698_106591562	F007126	AGGAG	MSGVINDIEALTEFRAHLMQFNRDLAENFATIRGHWRELGEVWRDDMYRRFGEALDEVTPGITQYLAATE

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