Scaffold Ga0209698_10432411

Overview

Basic Information

• Taxon OID: 3300027911
• Scaffold ID: Ga0209698_10432411
• Source Dataset Name: Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1025
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028286	Metagenome / Metatranscriptome	192	Y
F037388	Metagenome / Metatranscriptome	168	N
F105589	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209698_104324112	F028286	AGGA	MNGTIIAALPFAAMFGFAGYRVGTGRGRPVLGAVLGFALGLIGLGIFMLIARTAEAQVRRDRERAERQQPEQLAENQDTVR
Ga0209698_104324113	F037388	AGGA	MSDQATAETTAQQPCQPAPAKHDTLAVLAFIFGILLWPLGIYLGHASCQEAVLAGRKRSALALAGMTVGYAAVSVISLLFVAGLVGFATGQGG
Ga0209698_104324114	F105589	GGAG	VAGTLAGWAAARLAGADRLRFAEAWAVPLLSFTPQVTAGAWAGALLL