Scaffold Ga0209698_10001867

Overview

Basic Information

• Taxon OID: 3300027911
• Scaffold ID: Ga0209698_10001867
• Source Dataset Name: Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24214
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Clearfield County
• Coordinates
  • Lat. (^o): 41.170727
  • Long. (^o): -78.4726

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F038361	Metagenome / Metatranscriptome	166	Y
F044616	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209698_1000186713	F044616	GAG	MSTRTTLPTETIECPLCSGAGELTRAEILDRLGVRDFARVAQLSAEEAFRLFQSKHDREHQNSWSRFESELTRRVAEIRESHKDELRLALSEKDSLTRRVEDSLREIGQLREKNQLLEGEMSKVARVGKREEVDFAEEVKTWAGVWISDKLPRNGDFILAYRAPNGDPIEPRILIDNKDKSVISDGDIDKLVRDARERSLPVAALVARDENQLRQADRASRWSRKDGIWLLRSTRQWLPRDLDLLRPIFERMRVEGFDLLEKNAVLADELRRTFPEIDRIERELDKAAKAIQSVSALVVRYRERLRELCDTVKNEKIAPKPELDGSVRQKAGA
Ga0209698_1000186717	F000072	GAG	MDVERIIDDIEQLQEMFEAPDIRPLSASDISAANRRHDEMLADSPWSKLWQSYGVCCRTEAPVIQLPE
Ga0209698_100018674	F038361	GGAG	VTEPAKNERAKSEAVEPKSTMLTVQVLWACHAFNATPEQAAKRVVTDLFEHLSRGGSVSVHVTSSDGREHTLDVVAESR