 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027911 Open in IMG/M |
| Scaffold ID | Ga0209698_10000264 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 57999 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (58.93%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Clearfield County | |||||||
| Coordinates | Lat. (o) | 41.170727 | Long. (o) | -78.4726 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005064 | Metagenome / Metatranscriptome | 413 | Y |
| F013245 | Metagenome / Metatranscriptome | 273 | Y |
| F067062 | Metagenome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209698_1000026414 | F067062 | AGG | MLIFEQLVARGLMALDPRRNVLAFNLPVIAKFPRIRQQKIEEFKWLVGEWAFENHVRATPTTPAYVDTYFYTYELADNGSRYTVSGHGAKARPYLTFDPFSNRWMMTFTEGLFGVLQSSGWQGDIIVFAGALTMLGVDCELRQTITKKSQDEFHILNEEKLPDGSWRETDEFFCRRKQP |
| Ga0209698_1000026442 | F013245 | GGAGG | MSGKRLCFAVLAVATILAVSAVAQDEKNEIGGLFGRTFLSDQGIQNATYFDPIIHSGKGLTFQGEYARRFWVTAVYSVSAEGLFVYNWDVDLNAGQYGNSVVPSDLKKMFITPAARLNLFPTTAVSPWVSFGAGFGHISENSQLIYGGLNPGKSTTSAVIEAGFGLDVKVWKKLSIRGGVRDFWAGQPDFPLAPTGKTRQHNYIVTGGAFWRF |
| Ga0209698_1000026456 | F005064 | N/A | AVASIRTINSAEVTYNSTYPTVGFAPALANLGGAIGAACVPAQATACLIDAVLSNNGNPGGSGKSGYLFTTGAGTVSGGVNVGYTVAAVPITINQTGLRAFCAEEDAVVRVDPAGVCSLTEPGVLTFNPLNQ |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |