Scaffold Ga0209382_10257278

Overview

Basic Information

• Taxon OID: 3300027909
• Scaffold ID: Ga0209382_10257278
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1980
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009343	Metagenome / Metatranscriptome	319	Y
F026513	Metagenome / Metatranscriptome	197	Y
F102895	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209382_102572782	F026513	AGAAGG	MMPTPGLPTPSECGKRWLQAKVQEILAASAVALATPRSESDPACYWGTGLETSTTLYLRLAGDLEPKALLFRRTMIADCGVGLYFSQHNATTFIRRMLKKMGILSA
Ga0209382_102572783	F102895	AGGA	MADDHEERFRRHEEIMEGLARMLAAQHEFNRQQLEINADVKTTLARIETLMARMLPTGENGREA
Ga0209382_102572784	F009343	AGAAGG	VDHHLSGRLHWNTTHAATPGWLLFLDGLPGDAPTMLPEFDTSLPRDASHAEVVHLIGEMLQRETGHLPLQVQVTPLEDGTGYAFVATYEGPA