Scaffold Ga0209382_10021125

Overview

Basic Information

• Taxon OID: 3300027909
• Scaffold ID: Ga0209382_10021125
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7903
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009149	Metagenome / Metatranscriptome	322	Y
F009273	Metagenome / Metatranscriptome	320	Y
F021333	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209382_100211256	F009273	AGGAG	MQTMCLLGGLGLGAGLMYLLDPKQGEERRDLVRGYVADYGRQTGDFLDDTGRMLGRQAQAVLATTRRPFRRQPGLGERLLVQAEQLGTTTGMVLVGCIGLGVGLGYLLARQGGSQQRARLREQARVYWHPAETRHIPRQELRGGWRFFQGRDTHRVDAHTRKPAQAEAWYTEPREYDSIVLYSEPFVTREEAEAWARAQDKP
Ga0209382_100211257	F009149	AGGAGG	MMLRITHHSALLLVITLACLWAVTSLGCTDRPTPPQASAPSATIVSVEGASTTYHTRDWIRENGTVRMPSQSATDIRGKDAEGTVRGTITAVDPAAHRVRVRTSEGQTIVLAMAPRSLTGLKPGDLFSFTIPEAPRT
Ga0209382_100211259	F021333	N/A	RKWKVFMTIQEAISRAIEGGYPSKRAEDLALHVQAQYFLETSFWQALGRTLGWEGHGEYIQLSEQESHTISQPMWLSYWHRFNDHLAAGKTPESFFATL