NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209006_10057564

Scaffold Ga0209006_10057564


Overview

Basic Information
Taxon OID3300027908 Open in IMG/M
Scaffold IDGa0209006_10057564 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3481
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012141Metagenome / Metatranscriptome283Y
F047844Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209006_100575641F012141GGAGMGNRYWFWVLVRLGVGVAIVAWAASYLGAGSGEKEFQKTLDAMKQVHSFRVALAASPGTQHNEMLWEVDCNRDLFHYQWHVSDSSRPEMGMSQDELHVANQEFDRQSDGSWSKPKYGIGGRGAKWYCSNLAQGTDSYLLPPIATMIKRGILQKGDKKTVNGVRCREWLVAMRGAPNGLEHDTVCIGLKDYLPYEMTVDWERARSSFSDYNSPIQFDAPESVSQSASASNGSN
Ga0209006_100575642F047844GGAGVTACVICLGAAVWAQESDSPNALGDVARQARVQRASAPVDKSSKAQSLVDEMQEEQEAEENAPLGFKNYNAGDYRLFVPFPYTIEGRDNGGAVLLGSRLGITNTEVLAGAPVPFPAHIGDSELSNLVRQQASLHGSQAYCSAIRQGSHKAFRCAWQGNPSLLGHVVWGSMEFIVASDSLIPVMCVSPDDMHSCRIYDTWGHNTCSDRDRSLYGWDHRKAQAAADIRYRDERTTFQMCDQVIYPSIQLKEEIVVHPATLSERRRPKTAAGTIQQDTSVAAGGIQGPSLVDLARVTRQAPHGKAQATLDNAEGNSAPAGYQSFSLQYCPNPQQCTEASVVIPENAEVVSRVNGQHIFKAALNGEPVMLYAGPADVNAPYRSSTDPDYIRMRDLANTNGWSREKPDNVSTQDLTIEGKPALMTRFRYQREPKKWWIGERVLIETQRVQNQGAQNPVGQFLVGCTAPEEHFADAEAWCTTLLNSLRLP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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