Scaffold Ga0209006_10019792

Overview

Basic Information

• Taxon OID: 3300027908
• Scaffold ID: Ga0209006_10019792
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6100
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014775	Metagenome / Metatranscriptome	260	Y
F017683	Metagenome / Metatranscriptome	239	Y
F065012	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_100197923	F014775	AGGAG	MLRIYIENIGEMAVIECEGRIVRSEDAFKLRNAVNLQSDARIIVLDLSEVSAIAGGGLGMLVFLQQWAYDHDIRLKLFNPRLSVRDRLEHASSMREFDFATLDEMMALLARTDDRYEQAA
Ga0209006_100197925	F065012	AGGAG	MKNAYEVLQRKEADLARVRHEIESLKIVASLLSDELPSEELTKKPTRSAEEGLDPDSEKATGTDGMFSSMNSAPRSRFWNPLKWQK
Ga0209006_100197927	F017683	GGAG	MKFLKQLFGQGCLHRFSWPRVDAGGHHYQICSHCGTAYGYDWTLMKRTERLLVTDLRA