Scaffold Ga0209006_10008009

Overview

Basic Information

• Taxon OID: 3300027908
• Scaffold ID: Ga0209006_10008009
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9549
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030254	Metagenome / Metatranscriptome	186	Y
F031230	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_100080092	F031230	AGGAGG	MRNAIKSLLLAGATCALLATSAFAQVAGNPGDLHTPTPYTNEVRANTYGYTPGSGGPLGVFTAPFTAPVALMNGAPGSGGCGVSQDFNGRLTALCGL
Ga0209006_100080093	F030254	AGGAGG	MHNAFLALTAAGLAGLSGYGINAQTTPVQTAQIVNSAPDYSQEAGVFSQWLSTDAPQCVAVSKIGSVAHLTKLTREQFQFVRALYIAIPPISRALPPGDSAVVASVSGHSMIALVSGGETCARFLAPDFVLSMLTQVGKGESVAAGDPI