Basic Information | |
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Taxon OID | 3300027908 Open in IMG/M |
Scaffold ID | Ga0209006_10007219 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10039 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Algoma, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F021139 | Metagenome / Metatranscriptome | 220 | Y |
F026616 | Metagenome / Metatranscriptome | 197 | Y |
F051307 | Metagenome / Metatranscriptome | 144 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209006_100072191 | F021139 | N/A | AQGTAYELPWLFGPSIALALVGVDEEGTLRNCIYAEAVAELRFVGCDPKATACSRGEIDGFVYVLSRMGFRWLECFVPRKLKRSIQKPLQRAGFTCVDRELAHFTRDLRGKS |
Ga0209006_1000721911 | F026616 | GGAG | MSPLRRHGGGRPRSAHSTLDVAERWGISEKAARRLARQQVSDDLMAIMVYESKRYAAAQRRDIPPIVRYTGGMRALGMRSRIPAGRA |
Ga0209006_100072196 | F051307 | GAG | MMMSTHPLHTLGFEAVPSLTELGFEPQLAVGAQEPLSGRKIVQPTTSPAINQTLATEAMAAYKARLAEVIRQIPGATLVASRDAKNPHRLREKIQQEGQPAETVSDYGAAQIAVDSPQAKDAIVAAIRRHFTVLREQDNFALGDAEYRYRSDSLQLQMPNGASQELQIVPRPVFEANRQEHHDYKKARNAELAGRSAPAAVAAARAINDQAMERFNSKNGVVKGMVMKGSEVRLADGTVGRVLYADPNMRIARVRTQDGRNITVRHRDLKRDPGS |
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