Scaffold Ga0209006_10000178

Overview

Basic Information

• Taxon OID: 3300027908
• Scaffold ID: Ga0209006_10000178
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67468
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (75.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F001265	Metagenome / Metatranscriptome	735	Y
F001399	Metagenome / Metatranscriptome	705	Y
F024875	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_1000017826	F000092	GAG	VKQHLGRQSGVQNVEVSLLDGKVDVTPKEDGQIDPVQLLKATYDSGVTAAEMDMTARGKIVKDASGNLALQVEPNRSFAFAPNELSKRLESLAGTQTLVTVRGQLYKKPAGKKKAGLSAPLKLMILEVQKKE
Ga0209006_1000017844	F001265	GGA	MEELHIRIARVTDDLRTIQRELNCAAMQAPSDPELMEALNSLSETEPIETLRTALDQMRHFLWFYSQVMNNEPELGDKLRQNISGKTTSDEKPKVESSFLDQLSRADEAMLLHHLAEAKRQKPN
Ga0209006_1000017854	F024875	AGG	MNDPRFELLKSAPLDSWVALSEDETRIVAVGRSYSEVVEKSESAGVTDPVLIKTPKEWQPISL
Ga0209006_1000017859	F001399	GGAGG	MKLNDSITTYDIAEALQGETGKFEVTSPNGERYFVTCQPGHSIVSLEWAGSDPNQQPFLVRKVAQPVSLEGRKRSASAA