Scaffold Ga0209006

Basic Information
Taxon OID	3300027908 Open in IMG/M
Scaffold ID	Ga0209006_10000046 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027908 Open in IMG/M

Scaffold ID

Ga0209006_10000046 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	120738
Total Scaffold Genes	129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	107 (82.95%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

120738

Total Scaffold Genes

129 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

107 (82.95%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F006944	Metagenome / Metatranscriptome	361	Y
F032734	Metagenome / Metatranscriptome	179	Y
F040915	Metagenome / Metatranscriptome	161	Y
F048444	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_1000004636	F048444	GGAGG	MKLSLFQELVDLNGAFEQVVRELERMEKVGHFQRDLIRYARADVEITRLDANREFFDNFEALVEDDASWAYRFQREYKQKSKDPDDVYLGIKDSEERRKKKGLPPRIVILPGWDMSDEERYDEEQAERKRRAARKRAGAINRRRVSPAKGKKQAQAVVAVASEGEGKQ
Ga0209006_1000004637	F006944	GAGG	MKKKKAAETQKDLPKPGKQYPGVHGKIVDWAEHVFEEGMMYVRVRFTDKTELCWTLQTAHVIREADLSDWKTGDFKQLKLYTENEIGWPE
Ga0209006_1000004640	F000626	AGGAG	MSIIKKAPAIMTREVKLEEPVNQLLDDYARFIESSVDHVINSALKKVLWRDQDYRKWREARRTAQLGSDKGQPVEARGRV
Ga0209006_1000004649	F040915	AGGAG	MRGSADMAGMRDVGSRRIFFRFETVCQDQSLEMKLEFTPDFYDSEVRAVCGPFFSTTFGHIFSLPFLRCYSVAAFRGPNSDNRNEACLAVSWQAHEIITPEASHSHAAFLNIRQDSSSKGERCMKDTVHSIVHISVHLRISGRVRSRSSCAWHNDQFGRGQNTGLGWSDPTFVYVSVPKVIRGVAPAQLRGNRAECFVSATFRSRGPQ
Ga0209006_1000004680	F032734	GGAGG	MIEMHLSGMKARNGTLIFVCSTCKTPPNFTFGAQDKGELALLMLCPKCGIVLGEWNSVEARDRELSEFAKTLRSHAPFQAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209006_10000046

Overview

Ecosystem & Geography

Associated Families

Sequences