Scaffold Ga0209006_10000011

Overview

Basic Information

• Taxon OID: 3300027908
• Scaffold ID: Ga0209006_10000011
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 196831
• Total Scaffold Genes: 218
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 129 (59.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063195	Metagenome	130	Y
F071789	Metagenome	122	Y
F094576	Metagenome / Metatranscriptome	106	Y
F101529	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_10000011136	F094576	N/A	VANRERHGEASAEGFQVREHTATRRQLEASIRALLPSKEEIEELTPSKNSTTSIAGFGGIMTGYVWGRYRGHQVRKRRGS
Ga0209006_10000011155	F071789	N/A	MRRLLCAVILVASTVGFLALPANADTSNSGVLLSFDYSDNTAPASVSNGPFNIIVDVLPGDTTGLVRMFAVAPATTNDPNIVCHFRWINQSQTECVFNFPDNGVWEIHAQYVVAPQTDVVAVAVTNLRVLN
Ga0209006_10000011178	F063195	N/A	VKTRTLTGGERRRWYVHLALLVTLAGSLLSLIYLSHSITIHVVIGVAFMVMMQFHLYQRRRTVKSLVKRLVGVRSRAKVRMAVSDLILELLVLDVLVSGIIDGMQHHATQFPLAATLHLPPGLSQWHKLAAVVLVVYLIVHVVRRRKRLRRSHIQ
Ga0209006_1000001175	F101529	N/A	MTTPTLITFSSERSAAVAAIEAVADGRGWCNLSPDVEEEVADMKVNYFGLRLNKGVDVASYVTAPPRRGVAQPSTLGVLHSRSRLGRERIMLMLGGAPFVIRQDHNTRGLLLDVPVDTPAERVLTVMCTLTESLCDYEFKGSWTLSRFIS