Scaffold Ga0209006

Basic Information
Taxon OID	3300027908 Open in IMG/M
Scaffold ID	Ga0209006_10000005 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027908 Open in IMG/M

Scaffold ID

Ga0209006_10000005 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	237633
Total Scaffold Genes	219 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	175 (79.91%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

237633

Total Scaffold Genes

219 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

175 (79.91%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F002623	Metagenome / Metatranscriptome	542	Y
F003810	Metagenome / Metatranscriptome	467	Y
F004096	Metagenome / Metatranscriptome	453	Y
F083365	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_10000005111	F083365	GGA	MRNLGILWVIYGLLRLITALGVFMWSGTLTLMWGALLSRVPNPFALMDDFHAFLILAIIIGTAAGVIAIIAGLALMSGGASARKLGIIAAFFGLIGDPLGIALGAYTLVMLVPAGARPDS
Ga0209006_10000005123	F004096	AGG	MMKNFEFLFTAWMVVWAIFFGYEITVARRLTQVREEIERLRQQLNGR
Ga0209006_10000005174	F002623	N/A	MKIREYTDADFAALRRMYASQGFDYAFPDLRDPLFVSKLVLEDEDGQMVMASLARLTCEMYLLVDRGSKGGAGEFLGAPENSRRGRRAEARARYAQLLALHQAGERDLIARGLHDAHAWLPPRISKRFGRRLAVLGWMRDDAWTPYCKRFELK
Ga0209006_10000005184	F003810	GAG	MHIPESAHLWALFIGGHGLHVIKRASLSAGSTLSGTKTRMEWLRTNALGLAIRLFVNAAAFSYWLAHPAAATHAVGALGIPANFTLEPGHATAAMFGLSGDSLVDWAAAKVPFLQKEIPAMDHGAT
Ga0209006_10000005189	F001450	GGCGG	MPPFSFADHANCCSIQMNASPQIRVTRETYETPAGICERVMAAGGTNVYGEANFRVVWGGSRLTWIGGRWTDRDASGNVIREAIETRQVPKYLPMDRWHIERWMSPESYGSPEEWLAQTTEVEDGIRIAALGPYPARGEYEHCFTLAAADGGYLPLSPAACDWIVRAVEWARRQPRREQGGAIAAREARRARDWDRDADALLDDAVPAFHGAPFVGCAG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209006_10000005

Overview

Ecosystem & Geography

Associated Families

Sequences