Scaffold Ga0207428_10026051

Overview

Basic Information

• Taxon OID: 3300027907
• Scaffold ID: Ga0207428_10026051
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4885
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002163	Metagenome / Metatranscriptome	588	Y
F030801	Metagenome / Metatranscriptome	184	Y
F031558	Metagenome / Metatranscriptome	182	Y
F047168	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_1002605111	F047168	AGGAGG	MAIGDGMLAQVLLDYFQQHAEEFEQFVLERAGIGEGYVRWRGEEPQKRLVLKVTTLGSGLSIVSEREYALKMETISS
Ga0207428_100260513	F031558	AGGAGG	MQDGNPGQDPVCGRCKQKIEMAVRPEAVYQDGIWFHTACHRVGADQLFRAMRLSEVLKEAKGGVEIITSPLLQGDESPV
Ga0207428_100260514	F002163	N/A	MMIQEAIDKANEGGYHMHGSDGMETSYDGANNEFSGWTRKDNLSTFLVPTEETFLDPRFWQALGRALGWSEVCDLTIICVHGEEECQRCRGYYWMYQWHCFIQVLADGQTPEAFFARLTSSQTPRKQSA
Ga0207428_100260517	F030801	AGGCGG	MPDISAATCNAVCEKTAEIQRLADQLEDILSQAGLGQRRGSHKDSRCEDIKNICQDIADEVTPP