Scaffold Ga0207428_10001701

Overview

Basic Information

• Taxon OID: 3300027907
• Scaffold ID: Ga0207428_10001701
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22577
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (65.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006727	Metagenome	366	Y
F024927	Metagenome / Metatranscriptome	204	Y
F032236	Metagenome / Metatranscriptome	180	Y
F043057	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_1000170110	F024927	AGGAGG	VSDNAERDDRGEAMSWLDDLTKKEEQKLIELLRQRFPERGDNRRRGKD
Ga0207428_1000170124	F043057	N/A	MRTMVRLWAGRLLAALRIPGIVVAQSYEAEVMRARVRVSLSPLFSVVSVNGVDIYFHRLTGRIDGVGFSASTGYKADETR
Ga0207428_100017015	F032236	AGGAGG	MTVVCAWCQHQGRTTVLREKEPFDWPVVSHGICEEHTAVFLAQVRERKASAALDRPTAR
Ga0207428_100017018	F006727	GAGG	MKHSWIISTCSLALILGACSSAPPKPAGVLVVEDENRVRGCRPLGTVSDDALDDLQKKASRLGGNVALMTPQRKSKGGYFGLQEYMTADVYLCETTGAGTTPTR