Scaffold Ga0207428

Basic Information
Taxon OID	3300027907 Open in IMG/M
Scaffold ID	Ga0207428_10000551 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027907 Open in IMG/M

Scaffold ID

Ga0207428_10000551 Open in IMG/M

Source Dataset Name

Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44433
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (69.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

44433

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (69.23%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Tennessee

Coordinates

Lat. (^o)

35.8444

Long. (^o)

-83.9599

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020983	Metagenome	221	N
F022629	Metagenome / Metatranscriptome	213	Y
F023300	Metagenome / Metatranscriptome	210	Y
F041634	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_1000055117	F023300	AGGAG	MRKARVLMAVIALGLAVSVGHALADGPGAGYSGAKVAQIKFLDPKLNLVQLSDGMELRAPDRNMLTNLKVGEWVKVDFVADGGGRAVINEIEAAQPDEIPGPTPTAIGGISNHG
Ga0207428_1000055120	F022629	GAGG	MWLDRYADICRECLDLVAVYEASDGRIALLLRHTLVPLPEEFASMRRMTRGAARAAAGKLRRAGLRGELLVLQWQPLGAAAAIMRDWSVRYDADPVRRAQLTAVAERYAADERYLARQIQARQRLSPRPVGAPPPFAASDELLGLQSWYDAMAPTWLSIEPLLRRALVLKTHRWIAEHILIPAADGLTSAAQIRATTTGLGEALIEMIPPDDRGVWSVWVGLVVGDLQRALHRPSSDWNQAWARWLLLIAYSVPVPRERPAPVWPAKLTSLSALLH
Ga0207428_1000055139	F041634	GAGG	MAKARSGKKREKDAGDQPQLPGTPSSARESSPASATRVLPMQLQIGDRISDETGEWEVVSRPHTTAGGKTAHVRVRRADQPTVIEERSWGAHERVAVKRA
Ga0207428_1000055152	F020983	N/A	MRWDESPKFLLIASIASAVLAAALSLAAVWDHPGYNVAASALALLTALLAYRGYDRSTHRRLGRIQREHLVLRLRALPAPIEFRVVAVPHEEAVRFAQELLGVFVEAGWPAHGVYRALPANVASTGLFVAVQDGNFPSEEERRLLLALSEFGMYAVKSTSPKLTHPKALELLVGHRPTL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207428_10000551

Overview

Ecosystem & Geography

Associated Families

Sequences