Scaffold Ga0207428_10000121

Overview

Basic Information

• Taxon OID: 3300027907
• Scaffold ID: Ga0207428_10000121
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 106184
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (77.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001831	Metagenome / Metatranscriptome	628	Y
F011157	Metagenome / Metatranscriptome	294	Y
F013323	Metagenome / Metatranscriptome	272	Y
F030147	Metagenome	186	Y
F035357	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_1000012171	F013323	GAGG	MHVYCTKCSQPIALTDIIESSNGRLSHLDCKRPQTLTPEERALLFVYCSTHAVAKCIACGLSFRFAELAADVLGGRSNICPRCRHDLTENARAHLFGCERLPEEIRRQAQEVRETAQGLVKHSMALRDTSDVLMREMETALFRAQQSLKAVMARRAAS
Ga0207428_1000012173	F035357	AGG	MASGTVGHGMRRRLAALTVVGTLVFGQLLAYADPPDPTWIPGFWNDADFDDVIVRVTSTVGASETGLLSALAPQWVPIWTVSAADDRHDAGPVFDPHQPRGPPLA
Ga0207428_1000012174	F030147	GGAGG	MNRQLGPLACQSLTAAVALLALSGCTKHYWERPGGAAADFERESAACIDDARQGPLGSDAREQIYRACMRARGWKRVDVPVADDNQFRGPEDAEDFVNPPPALGGRRYQPR
Ga0207428_1000012184	F001831	GAGG	MRLAAIIGVTILALGCAIANTPQQELAYARWAQCSSPDGQLERIDLDGRIVFRYSRPGGRQVVAQCLAEAGRTGPPLPAPLAVGPPGGP
Ga0207428_1000012188	F011157	N/A	VKRTPYVIAAVALALAGCAHAAGLRYAFTPCNPGFQNAVKACFYEAGHMPPTAAYDYYADSGVIEKHWKVRYESCMFRRGYNQLGEPTTWQPKERFNGATGWPWPNDPPKSTWTWVRTAGTGDRHYYDAVCEP