NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207428_10000049

Scaffold Ga0207428_10000049


Overview

Basic Information
Taxon OID3300027907 Open in IMG/M
Scaffold IDGa0207428_10000049 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)179267
Total Scaffold Genes183 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)143 (78.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008504Metagenome / Metatranscriptome332Y
F013145Metagenome / Metatranscriptome274Y
F018955Metagenome / Metatranscriptome232Y
F057224Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0207428_10000049115F057224GGCGGMVVGALTVFTGAVLFLAAGDVIPLPDTTFGGPRWLVALLALGIFFGGFWAIAVGLPTPRMRGLLGGAAGLAAISFGALLMTWLAVTGGGRLAPARPPRGTLVLGPDVGGILVHAFFWLFAIPLDVIALVGWFFALRALLRRRPP
Ga0207428_1000004912F018955GAGMSASTRNDSGSSGHARAEELRLLAERLRKALQQGGVPQLLRRSANRLASPWLQFGSVTFFRRRLDGGPEAPRARPGLEIFEASLADVSLILEASDPRRTARIVRERLRRGDLCFMALDPHGRPIHSGWATTVGAHVPELERDIVLRSHEAYLYDAFTPPSRRGTGAFGFVLDHLFVKLQALGARVVYSYVRSDDPKGQRAACVRLRPVGTVRHLRVSGRAPLLLGGLHNRLPTLVRQLVDDEGRPLR
Ga0207428_1000004949F013145GGAGMRWTGVVAIAIAALAIPAMVFAQGGQGAWCGGSYGPEGTNFGPCPAAQSGAQVAGQASGIQSQTVATEPQYPANQVTFRDGKAYFNQQELNLNYRAYPDRSGEFQSPGSSD
Ga0207428_1000004950F008504AGGAGGMAALRYASLALVLLLFGCASLDPKPIEVDMPAAQKHFIVRADGDALPR
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Institute for Fundamental Biomedical Research
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