Scaffold Ga0207428_10000015

Overview

Basic Information

• Taxon OID: 3300027907
• Scaffold ID: Ga0207428_10000015
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 332663
• Total Scaffold Genes: 299
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 197 (65.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001931	Metagenome / Metatranscriptome	615	Y
F007132	Metagenome / Metatranscriptome	357	Y
F011178	Metagenome / Metatranscriptome	294	Y
F057405	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_10000015167	F057405	N/A	VTTTPPEEPQWYDLETPGDVLRRIKRTALVTAVVFAAFSAISGGFQAFLGLTCSAAVTMITFLWLEEIVNILLQPAAHLHARRLMLRTLARFALLGVALTVTIIIARFNPVSVLLGFSIIVVGICGEALYSLVREVARR
Ga0207428_10000015195	F001931	N/A	MSTDASTPKQPLQEQRSQILSGVVTTLLSDLKNGVGDKDRRRQVEEWMRTLAEKYPEFRIEIGLRDYYLAEAERLRADFDKSSDLTEKLGLGRSIESFLDRAGEYDRRIVDRG
Ga0207428_1000001528	F007132	N/A	MNIRDEQKTRQVVRTTAGKVLRSDDLIGDEKDIAAGLLRANPGFGNPHVVRCNWCRETRTLFRDENDGPFQLTAHGWRCTPCDVSAASQEIKF
Ga0207428_100000156	F011178	AGGCGG	MTGTAREAMKINIADLGPSMRERLSERLDRAAQLRCAEHDQPVVSVTIYGRENGWFDARWTTCCEALEQQAVAIVKERC