Scaffold Ga0207428_10000003

Overview

Basic Information

• Taxon OID: 3300027907
• Scaffold ID: Ga0207428_10000003
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 799783
• Total Scaffold Genes: 636
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 404 (63.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021377	Metagenome / Metatranscriptome	219	Y
F066113	Metagenome / Metatranscriptome	127	Y
F089128	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_10000003109	F021377	GAGG	MATQNPRNPNAAVELPTAIATLEPEVVVEQLRALRAQLGEVTPLTRSERQLLRRRAKTSNPVLQASINMIGALDQVSLAVAQPADGVRRLDDEANRWTAVEDELRAMLEGVAGANLVRRQRIALIAGQAYNIGTQLARDPANAVLRPHVEEIKRLKRFARRKKAGEATQSPPPAPSSVTPGNPKP
Ga0207428_10000003420	F066113	AGGA	MSPEFPIRVITDDGECEVIDSPDELLARVDSLDSTDPEGRVWIRDALDRTVRLRMRNGIVEELTADSQ
Ga0207428_10000003622	F089128	GAG	VTILLNVLLGFVPALILGASIAAGIEDDAGHRRVFLLIYGLWAFTLAGWNWLESAHVAWIVLWALFGAVSLALWFMRRR