NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209404_11043613

Scaffold Ga0209404_11043613


Overview

Basic Information
Taxon OID3300027906 Open in IMG/M
Scaffold IDGa0209404_11043613 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)560
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058209Metagenome / Metatranscriptome135Y
F093698Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209404_110436132F058209GAGMIYLLIRKFHIADSNMKPEYRVEKYSDNIDEANKFLSALTLLENNDNMTWHIVKHDFNEPLILTKEVA
Ga0209404_110436133F093698N/AKPDDFMTTGKAFVSKNGVVCFIYWDCDAEPDEKGNQWRMAKNPMTIKATQTIEG

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