Scaffold Ga0209404_10115859

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10115859
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1600
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F054160	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_101158591	F054160	GAG	MKYFEKIDKDLLNNRALNSHEKLIYVICKSFENAPNECRISHKYLMLRTGIKTKATLIRYLDRLTLFGLLARKQIDNGTCHYVFDKPTMQEYILHNTN
Ga0209404_101158593	F004990	GGA	MYGDRKKKCCSCENGADLKEGNKYYCCDHYSLCVLGKPLNEIEKELNNE
Ga0209404_101158594	F008915	AGG	MENNTITLDLYEMQSAAHLGILRCLESKKHKENWGYNYKGSLNDQISKSISGSMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQVRTQLEKPNNKNSLIIRPKAKPGEIYILIIDKAPDFEILGFVNSSYVLGQDRFKTDFGLARPPCYSIPPEKLTPINLLKDSSWN