NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209404_10065991

Scaffold Ga0209404_10065991


Overview

Basic Information
Taxon OID3300027906 Open in IMG/M
Scaffold IDGa0209404_10065991 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2078
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001086Metagenome / Metatranscriptome782Y
F014744Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0209404_100659912F001086AGGAGGMKPDKCTGWAIVTTAERPDGTWYDETITDIDDDTASYVDSFLTEYYEDKEKSKHD
Ga0209404_100659917F014744AGGAGMYNNLNKKLSELQSGNYLMKVKSISDRRPNKYYSKEYFVTVKYQVTDLNNSKRKFGVIVSGMGSKPIELNVDRELLPTNYFVWDNFDEVLFERLSRWQKSINEEGYYKKDRDTGRVVVADEKI

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