Scaffold Ga0209404_10058905

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10058905
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2190
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F034211	Metagenome	175	N
F057352	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100589051	F034211	AGGAGG	VAYLKTDDLVIIPNRNGSNIQARVVDMQFRRFRRTWKDKATGENKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRDEYAAEFGGPWIEKMIEDSRAKRESAK
Ga0209404_100589052	F057352	GGAG	MMKLWVLNGTYENELFSSIHLTEKGCALAAIADVLDFLSVSDEESALHVMNECYAFTKTDGEQTEAIEWDHDKMKEMSSKELWKMFGDWTEACWERMSDRSYYIDATPQMVQA
Ga0209404_100589053	F010950	N/A	MMKIWVVRQTCTYDNETYVTSHLTEKGALIEAIKTVRGDMCDGFDEDELEDYRPDMPHDPEEDLVQYNSKQLHSIVEDWWEYSWQINEQAQYQIYETQVMG