NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209404_10046561

Scaffold Ga0209404_10046561


Overview

Basic Information
Taxon OID3300027906 Open in IMG/M
Scaffold IDGa0209404_10046561 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2445
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameTropical Atlantic Ocean
CoordinatesLat. (o)15.249Long. (o)-20.515Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F034394Metagenome175Y
F042629Metagenome158Y
F087902Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209404_100465611F042629N/AMTITTYDALDDIISLIKTKWSNLRPPTISKVWEKRTVGFIDDRSDQVILSPKGEDIQYFGLGGSAFWHNQIVEMEIRTYQDIKRHNSVVKEIVKIIKDNITGTNYTDLRVIGSFSKNFAYRNMYSYVV
Ga0209404_100465613F034394AGGMVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEDEFDRRVGHTWKTKKITREVHDLPLLYTFGWGTPIFLQHRNIYELDTSQGDKIEIWKGESDSWENIVGQDQWYHAEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDTEIPLDVADAVIKMTAIEIMNTSFRMDEIPSGGSVSPSESKKYWQEDIETCIMNRREVFVVP
Ga0209404_100465614F087902N/AMTYTNHNVKDVSADGAVKAGHGVIVSVHVTKAGASGDKVVFHNGDANSDPAEFTVYGESIQNIQDIARRFEDGIYAEVTGTTARYLVVFK
Ga0209404_100465615F016619N/ASIQSELTSKLKSTIVDVTYGGSDNYATNGNTVDLSLGGRISTVIGAEILHCNKGLLLQYAPAAGGAAATGKIKAYGHTPTSSTATVVALEELDASDTAVNSMTIRIRVIGF
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