Scaffold Ga0209404_10046130

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10046130
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2455
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004071	Metagenome / Metatranscriptome	454	Y
F024885	Metagenome / Metatranscriptome	204	Y
F056050	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100461302	F056050	AGGAG	MKKKKVVKMEDFDDWLSECPVPYEQTCSGLNTTEYYSFNLIDCEMKSEENDES
Ga0209404_100461303	F004071	N/A	MEVIITFMFMGGGFAEIPARLQPYEFCDDKAQEYITYVENPDYEEGNGQIWIHGTYKGRKIFATYCKTTDKKYWVSYYDPEYEKNKK
Ga0209404_100461304	F024885	AGGA	MDNDNKIVKYKGIIRKSAINILAWLENNPNPTQEKAQELLELRGKMKDAIFNYFDNIKDWEKHTTTLPLDEARLLEQKKWLEETQGIEGSGN