Scaffold Ga0209404_10040574

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10040574
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2609
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F013362	Metagenome	272	Y
F075988	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1004057411	F013362	AGGAG	MSSEKQLLLIILVGVIVLGYQWYKDKKKNDYWKKYRRSQGWE
Ga0209404_100405747	F075988	GGAG	MTNKVSQWLIDYVKKKNGVDLTNVPSDKSWTELNPFRDSTILSDDVIKFINEKNSSGIQSSMDKVEKANDDSIKQEKQLNTINKGE
Ga0209404_100405748	F002768	AGGGGG	MSSEKLKTSWWSLTIQDYPNYKPNETDLEHIAKCIKDGYDQGQLIQEEEDE