Scaffold Ga0209404_10023274

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10023274
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3414
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Leeuwenhoekiella → unclassified Leeuwenhoekiella → Leeuwenhoekiella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004179	Metagenome	449	Y
F056667	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100232743	F056667	AGG	MMDLDTIKDLNKKAGLNAKENKIMPLVFNSVDMDKLKHNDIEPIRNMPDLGNSIPKGWNRFNLGKIKDKFTYNYKIYSDDADGSGAFFVDQGMGSDNEPAMTIPQFIKSLSELWNKNKNLGYGIVETGQFQVKIGVFKYE
Ga0209404_100232744	F004179	N/A	MKLNKDDLRNKEIILELKNVYGKELIYPSCHIANAMIKLKNAKTFTKNDLNVFKALGLIIKWKAGQI