Scaffold Ga0209404

Basic Information
Taxon OID	3300027906 Open in IMG/M
Scaffold ID	Ga0209404_10022058 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027906 Open in IMG/M

Scaffold ID

Ga0209404_10022058 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3503
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3503

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured marine virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Tropical Atlantic Ocean
Coordinates	Lat. (^o)	15.249	Long. (^o)	-20.515	Alt. (m)	Depth (m)	55
Location on Map

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Source Dataset Sampling Location

Location Name

Tropical Atlantic Ocean

Coordinates

Lat. (^o)

15.249

Long. (^o)

-20.515

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020371	Metagenome / Metatranscriptome	224	Y
F056157	Metagenome / Metatranscriptome	138	N
F106115	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100220581	F106115	AGTAG	MAVATAASIQAHLIGGTYPEGTLNANNIFDYEQYTTRRRYPSCEVITTQPQSTIETKRSTDTIVGFEINYYDKNLGLRTDDVSTQREVENAIMTRMETMVLQDYKIVFESKTWSRQSVQRDGGHPAYLVSTLKITVKQVNVTEMPVDGVLKFKVSGSSVDNAPSGDYTYTNVFDVDLQSGYRDIEEGYTGSNIPRHFAGHIQGRFICNIMVKNADLGSTGDKLNKMPLLRSNGEKPEIKFVYTNKTADEV
Ga0209404_100220582	F056157	N/A	MAKKKLASEDYWAQQIIRAQSGGKDYIFALVRRKYSDDDIEPVGPGEYIGMTEKRSYPKITDNDPDSDTFGKRIDKPNSEPTGIKMEYQDEFTPENIKKYQTMSGITDFGETILIYKFKQMSIRADKVNEFWSISQDDAYNKYILKEQVIKIEEDKSNTRRRISKKAG
Ga0209404_100220585	F020371	N/A	WETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVIGLADGSLTAKAAAGAWDTFTANTDHSDNSPLLDLGVAQLLIEGSGVGGKLSRIGMHPLDFAKYMSNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNSIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAAMIQSETGRQLTGCTTPTNWT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209404_10022058

Overview

Ecosystem & Geography

Associated Families

Sequences