Scaffold Ga0209404_10022000

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10022000
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3509
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F015659	Metagenome	253	Y
F020445	Metagenome / Metatranscriptome	224	N
F046315	Metagenome	151	Y
F058519	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100220002	F046315	N/A	MNNTLNKKLLEYSLKSGYNDEFIKGYMKRNNLLPKEFSFRKPALDLILKKYNKKIIDFVRDTYSPKEQKNKLAQISKILNPKKDAPHYYTINDLAYDLCTWVNNFNTSSVTISPEFFMGENVQIYCIGELFGNGQIGLHKTKDRHKINIHPKYSSYQAIECQAEHKRGLMMLFQPTKNIDRTANNRSVVCQDKKTKVIWFGFLEPQSNGKYNILDKSQSTGKTIGKLAENIQLSWCAEVKAAYYPNIYNI
Ga0209404_100220003	F058519	N/A	MANHLKIIGEAYEKFKDTNTSVSANKEPHSLRAMKRYFLTKEQAKKCSNASLKAGTIGHNIVEICLNKNLTVDEVFASEEIQKEIDAYFPIDKTDEMKFKFAIKFLPETANNHLENFKELPKQKWKTEVEFIKWIEPVNVPFRMFIDAFGKTHINDIKYKLPTVKFAPLKTKQTKENPNRIGDWTCSHPKLDERVFTSDLMQIALYSYTTGLKPSLSYASAKERYLFTEDNCEELKQENLKLWLNELIAYEIAWEKKLKAANGSVEELLWLNIPDFSDIRKKSFWWNSIPKEYMENYLKTYV
Ga0209404_100220004	F006892	N/A	MSDMGIIKPLRNRVRDLEVINESHQKKNGQLRVEIQEKDKKIKELIEQINNPLKKMRGDGDL
Ga0209404_100220006	F015659	AGG	MKNGLAEAIKKFRDSIDDKDYANLGAKGKYLTVPYRLKFVRDFFGERMSIQTESTELSNGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKPNVVSIKPTAKPKVSTKELADEWIAIMKKVADNKELKSIGIFEQNLNPLRKEYLSDLKQINSDLIQQARIDKEEVSLHKQINKRKDNNE
Ga0209404_100220007	F020445	AGGA	MSDYDNTAALWKRQPRDTDVAGKKYPHYNGSITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEEQPF