Scaffold Ga0209404_10016291

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10016291
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4074
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032237	Metagenome / Metatranscriptome	180	Y
F053965	Metagenome / Metatranscriptome	140	N
F077161	Metagenome / Metatranscriptome	117	N
F090238	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100162911	F053965	N/A	TAPINSPAERAAKETILQITESQWWKDNVGREFKMPKKYDNKKQQAIFTEPQFIFIGNFIFARHEFCEKCRLYKGLLTYTNGQMVYAKPYVT
Ga0209404_100162912	F077161	N/A	MDKWCMRNLMLPEIQARFDRHAKLHRFEVDKLFENVKHKPFTEMQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDIVTEEIEHVQDSITKQDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTKQTDLIPGYGYQFYGDTWRMMKTTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKQSMDYIIDHCVKDVKMTYEGLKRAELFNNIGRAKA
Ga0209404_100162913	F090238	AGGAG	MRIHLEEGEEAHAEFHTHDGTTEIWLGGHLTIWGLFDTLVHEGLHEAIEDNTDQPTTEKQDHWVIQRLCF
Ga0209404_100162915	F032237	N/A	MSEENRFIDKTTSLKTVERVKFSLKNFSKGSKVEISWAFNPEDSMHIDQFLETDPEKNNILTALRGFKKLCEDNLGVKILEDE