Scaffold Ga0209404_10010086

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10010086
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5185
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000896	Metagenome / Metatranscriptome	845	Y
F023710	Metagenome / Metatranscriptome	209	Y
F037814	Metagenome / Metatranscriptome	167	N
F059337	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1001008610	F023710	N/A	MLKTIEKRLESFVRAELAGVHRIEMTHGTMYLVLDKPGDCDFIHREIRKFYKENINPEGGVNMYAVGEEFAFDFVPEDREAPVFTDEDEVEAQAEIQMDLEADAKEGR
Ga0209404_1001008612	F000302	AGGAG	MKTMTQDTKDRIRELERQKIDLEDRLEFFVGNNLVKMVEIENEIFEIEDTIKKLTG
Ga0209404_1001008615	F000896	GGAGG	MTNKINMVINISILALLIYLSVAVKQLQDKVFPDPNIMIPLIGQMDNRSEFEYNIREFLNNALRQAITEQEKQ
Ga0209404_1001008617	F059337	AGGAG	MDIWLSERIEGELRKDGWVIPKKPETGPVFFKDKEVGFIDNFVGLSIKDEEQEAIRYLVDNETRIGYALWNIPSMERI
Ga0209404_100100868	F037814	AGGAG	MEISLGISIVMLLIILVSFTYMLKELKECQKIIKKMQRRSRKYIREVVSND