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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027906 Open in IMG/M |
| Scaffold ID | Ga0209404_10009445 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5375 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tropical Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 15.249 | Long. (o) | -20.515 | Alt. (m) | Depth (m) | 55 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000724 | Metagenome / Metatranscriptome | 919 | Y |
| F003326 | Metagenome / Metatranscriptome | 494 | Y |
| F005266 | Metagenome / Metatranscriptome | 406 | Y |
| F024645 | Metagenome / Metatranscriptome | 205 | Y |
| F077787 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209404_1000944510 | F024645 | AGGAG | MQKNKKQFYITELHFGDDGLESYTDHSGPFTLIKARRIMEKLLKNPGQWINPYVMDIRGPRHTNDWGARTEFYSHKEDR |
| Ga0209404_1000944512 | F003326 | GGA | MATIKQKKKLIKTIKNPIRYFRLNFSRYGGEVAMGTITKEQYEYWSDKDGFEEYMSQVDYDSEDANKDIPKEAQFDQPFYEYGDICHMSGPEWDDSQTLYIEELDKDGKPLENDDGGFVADIQHDFGDLESLGALIKCNEEHHAGSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLTIEMTNADGFKVFNEIEYDGEVYYLEEDSTGKSSSFYVAKGDNLNG |
| Ga0209404_100094455 | F000724 | AGGAGG | MPKKEKIWNGGMPSGPRGPFVWQVWVKGSKKSIRVVAFDLQHIKDQLTGKAVIKAKQLPEEKDEFSNSLPLGPKGAIVNQPADYDRGFKILRQWIDENGGPPEEIRAKLRELWIDYDRGPRKTTRSSAKKKGRY |
| Ga0209404_100094456 | F005266 | GGA | MSVHIRYRFLKEKGDYLKDEHLSRGYTVVEANTVHPFHQVLKEFYKDFKGKGVQILNIWRTPAGEANYRMEEEERRMSE |
| Ga0209404_100094457 | F077787 | AGGCGG | VSKKQFRVVLSYDVQKTFIVNAKNEEEAYDKAYDNWEGEDDDNWEYRDHIETEEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |