Scaffold Ga0209404_10009244

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10009244
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5442
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045687	Metagenome / Metatranscriptome	152	Y
F049758	Metagenome	146	Y
F067644	Metagenome / Metatranscriptome	125	N
F072524	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1000924413	F067644	GGAGG	MFKKEMSIKEFIELPEIQTLINEGLMTVNAIDEQEENIDDNIDEFVDEINKTGKLT
Ga0209404_1000924418	F072524	GGAGG	MTLRMAKNGVALEYFTIKVDTGFNLDELANLILGWESDLDKIKKIKSYSKLMGIAKKQLIDRGLIFLECAWEHLEHIEDLDNVHREVVEHIKDVETTKYLGKTTEEIKQIQSEVA
Ga0209404_1000924420	F049758	GGAGG	MYHIILWLSLIFASVFAMVNNEIYLSLSLFLIFAVNVAYNFTR
Ga0209404_100092445	F045687	AGGAGG	MRRLIDITDDDINNGVQCDNHKCAIARALKREYKTDDVHVMVEDEDAILIVNKKELKYNYENDVLNFIECYDNMSTEDDYYLTPKPFTLEVVE