Scaffold Ga0209404_10008970

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10008970
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5522
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011663	Metagenome / Metatranscriptome	288	Y
F041489	Metagenome	160	Y
F052938	Metagenome	142	Y
F086177	Metagenome	111	N
F087774	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100089701	F041489	GGAG	MNILVADIKFYVIDDDGNEVLTKDKKHIQLYQLKRDRRFKALEYLTEDMDMDLLEEINE
Ga0209404_1000897012	F087774	GGAG	MAIKTINATYWKQSTGLTGQNLTQSNQAKFTRVAKKYHKITEKSLSKTRLYKASRVSARQVKKEFGARIGSTSIAMFEMLLTAIDQELKGMKTAIDFGSFKVKSYNDFSNSNTRKKA
Ga0209404_1000897014	F011663	AGAAGG	MFETLVLVCIIGTSNICHTLADLEGPYKTKQECMDRAYEIAADVPEYMPNFQAMKYKCIEVEEKDADKVRT
Ga0209404_100089703	F086177	GGAG	MTITSKLILMICLMMGTAMFINGLNELMYEVGAVYILSYTISIIMLCVGIRILTKVEDNTNGRRRTV
Ga0209404_100089706	F052938	AGGAG	MIHWKTKEEMGEGYQLNQDEHKDNEYNYLVAVDEHETNTMRTKYLIRDVWDMDKLLDLKNHLDDIINERKE