Scaffold Ga0209404_10007467

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10007467
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6095
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024198	Metagenome	207	Y
F043972	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100074672	F024198	AGGA	MTDNYKVVAYTPTRDPYPVYKFYNEPEDWSCNGTVKISCKDGRVNVTIFEKDSINIHKLEVYSDDGPVGARLTEQCEHPA
Ga0209404_100074676	F043972	AGAAGG	MNLVFYSYKKSIHAHINDHELKRLDHSIRSLRDFNNEIPVYLFCDDPAFIPPYFRLNYNVNVLPFVDGFDHNMLSAWSIHRWYNLKYFEDQSSNILYLDSDTIFYDDVQYIFDTYSRYDVYGREEFGFRHDPNTGGGKGIREKLTRVDQAISALGGKESVYKYCCGVILLNNNIHTRIISKLDELTELMNIFKNGAQLMPIPNSRIVDQYAVWIILSRLSSTGGMFGIQDVTMGYIEEKHQEFFNPVILHYTTKGEQEFAESDPKYNNLLRDVDQLSEDIDPYHVL