Scaffold Ga0209404_10006572

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10006572
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6537
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F090847	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1000657211	F090847	AGGA	MIDEFEIEWIPEDTGAPYTEVDMTEPSFSEIPAHTVDKLCKKKFGHTNWARLGQMSPEDLVGNPCEIDYVEGIIYFKHKTLV
Ga0209404_100065728	F000720	GAGG	MTLIKENNKVRTELPNRMRSTTFTLPVDDRKVIGIVNYTVDTDGIQPQALWVKIKPTDSYLDRELRASGKLVSRLMQHGESMKDIVDTLSQDNIIGHMVNYFAKNMEDIIMGAPMDKKQRMLSTDPYAMKE