Scaffold Ga0209404_10005815

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10005815
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6963
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010829	Metagenome / Metatranscriptome	298	Y
F020814	Metagenome / Metatranscriptome	222	Y
F045695	Metagenome / Metatranscriptome	152	Y
F059885	Metagenome / Metatranscriptome	133	Y
F061900	Metagenome / Metatranscriptome	131	N
F062149	Metagenome	131	Y
F084706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100058151	F062149	GGAG	VTETQDKDLSAEAEQRDRWIKLLRAGYMYHQQEVKDTQNPIIGAEPSDINLFHKALAVAIQDCIELIQQMEAYGYFDEELSTPGMAG
Ga0209404_1000581511	F045695	N/A	MKDKRQLFLNIWNKKNSPVRDRIKSKLENRGIEPTELNCYEYWMGYIRPWADIRGNIHHINPFRNEAFMRSIGRNKYGTPFKVANRNKKKKRKFRK
Ga0209404_1000581513	F020814	AGG	MGRKKGNLGHRVPVRIGNPPNKQVYPEWWEKEENLMRLHPSYRRKDEQKKQQKK
Ga0209404_1000581515	F059885	AGGA	MARMPLSEFKERMAVAQEMLKEAYPDNVAVEQLCEAIGIAGDVVVHMSIPFQQVVEEKLDIDN
Ga0209404_100058155	F010829	GAG	MGNLADHRRLREEQGLYKEDPGKGTYTKDELDYIPFLGDNPSEERPAVYTARFNVRGGQIELEAKRSGGKLYLTCLADEKHNRALFECVERFVAAIFDGTARKISEAQPDDSEIMKLKKEIEQLEKENEGHIETLVKLKDLMK
Ga0209404_100058158	F084706	GGAGG	MKQPEIGTTLGKCVFDNGIIVEGQSIRSQYATLRSGKWICGECLLEMLPIALEATQSHMIEEAEKRDKLIAEVKKYGWSVNPETGKLEKL
Ga0209404_100058159	F061900	GGAGG	MTDSSSEEMHMAQELMEAKMALGQARNQMTHMLRMGNFHIEIVPNKDIDIEKFFTKTMDNLFDRFGKDSLEVKVSGMENMKPPNGGGGMHG