Basic Information | |
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Taxon OID | 3300027906 Open in IMG/M |
Scaffold ID | Ga0209404_10005599 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7112 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Tropical Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 15.249 | Long. (o) | -20.515 | Alt. (m) | Depth (m) | 55 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F019327 | Metagenome / Metatranscriptome | 230 | Y |
F032309 | Metagenome / Metatranscriptome | 180 | N |
F033761 | Metagenome / Metatranscriptome | 176 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209404_100055991 | F019327 | GGA | VILKHYTLKPTDLESKHISQIHEIIFKVIEDKKDEYWKNYVDYSVFEHTAITIGLIDEQVKTFSSIYNREFYGDGVYRLFNRFLVSDDIREIGGSKTYGGDHRFFEMVHQQIEYVKTLNPSFYFMSRQRKNTKWLRWYFDKFNKQYDTDLVVSDKQYMVCDGSEYDCSQTLIYPKDKLVPFKSYK |
Ga0209404_100055992 | F033761 | GGAG | MAIKNNHEFYPLDSAYQEKHKELFAFFENLGVDIEINQDFTGLKTLLLSKDKDDYPYDFDPAFETKMDNNTAFVLYAKIGDEIVATYAAKKLAMTTFIEAMKEKFPGTYEDVSDILGTSAYSSCQWVSKDHRGKKLGRVLDHLKKHICFDLMKCTNNYAIHKEALADYHTEHLGYSNTEKLALIPNGDVGGAGEVIDKIYNITYTTISEWEAKQSDIKTLYS |
Ga0209404_100055993 | F032309 | N/A | MRNETKEFFDYTQSLPFKDITHFWDIPHKEMLDEIKTVDESYWRRPFDADNDQIDRMKLDDKESVNHYPGLKGDLIEAHGWKSLCFLNETGNSKDQINRFPAVFNTAGDYKATLKYFLDNRKWTNVAEFSPTLVKFFKEVINKYMHVGQIFVTRLEGGGVITEHNDVPEDTKHLLGGEQVHMFDMLNTFNLCLNHVESCYGVFDNKIIPAYDGCLRWTNVGKKHWVVNMNRKPQYQIIWQGIYKKDFRRLVMENK |
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