Scaffold Ga0209404_10004946

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10004946
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7597
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F015102	Metagenome / Metatranscriptome	257	Y
F027536	Metagenome	194	Y
F052260	Metagenome / Metatranscriptome	143	N
F053978	Metagenome	140	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1000494611	F053978	GAGG	MQINEPTKQMIREIVVELFKEVASKQTFGVSDEVLQLDEHLHDWTGRKIDNYNVKVYGARLEEKY
Ga0209404_1000494613	F005813	AGGAG	MKLYRNSNGVWAGTQADARKMCGKNYTPVDVPVDKPSLLRFLNANKVGSGSISDTKEITSEATELNKGAMSWIRWSYDRMLDGKYDDAKEMLYKGLVLARKERTDEE
Ga0209404_1000494614	F103094	AGGAG	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTVSH
Ga0209404_1000494617	F027536	GGAGG	MRVSPDGWRYKVTPIDRVINNCKRRADDAWWDGNDDEARLHEQEQKLYEKDREEGVLWVPNF
Ga0209404_1000494619	F015102	GGA	MTGDDDAEDKNTPFDDVTHWVGNLPRKDTDSTKRVTKRSTWRKIKSNILSKKLGVETKPK
Ga0209404_100049465	F052260	AGGAGG	MFVLLATKPLNDGTKGFRFNFFGKKGIVRQRKLKSNGIKFTKGDCMNAYHLGKTTVYTEQSVNKTTARKFCHLAG
Ga0209404_100049467	F004493	AGGAGG	MQNSVTKNNAWDFKNHEWNILIESNGLLIMWFIEWNQKVKDNKRWGDDLKIQDFFAFKYNQTAGCDPWPMKDAKISLDGKFVSEGDDDLEPYFMINTDDGVGYIYPYAFVALPKKSGGHHIVRMD